Greencircrna

Author: iqew

August undefined, 2024

WebJul 1, 2024 · GreenCircRNA is a recently published database focused on circRNAs from 69 plant species that act as decoys of miRNA . Moreover, this repository includes basic information about the circRNAs , including their genomic localization, host gene and basal expression values. Besides ... WebDOI: 10.1093/database/baaa039 Corpus ID: 219537982; GreenCircRNA: a database for plant circRNAs that act as miRNA decoys @article{Zhang2024GreenCircRNAAD, title={GreenCircRNA: a database for plant circRNAs that act as miRNA decoys}, author={Jingjing Zhang and Zhiqiang Hao and Shuwei Yin and Guanglin Li}, …

GreenCircRNA framework. Download Scientific Diagram

WebJul 1, 2024 · Here, taking Arabidopsis thaliana as an example, we firstly show the method for identification of circRNA and construction of circRNA–miRNA–mRNA networks based … WebNov 11, 2024 · GreenCircRNA is the first database for the prediction of circRNAs that act as miRNA decoys and contains the largest number of plant species. Database URL: … shulker boxes plugin

GreenCircRNA - Database Commons - CNCB

WebDec 3, 2024 · GreenCircRNA is a Wiki-database of plant CircRNAs. circVAR is a free online genetic resource for circular RNAs in human. See all Databases WebJul 1, 2024 · Circular RNAs (circRNAs) are a class of endogenous ncRNAs with covalently closed-loop structures, lacking of 5′ caps and 3′ tails. These novel ncRNAs are ubiquitously expressing in eukaryotes, exhibiting expression patterns of specific cell types, tissues, or developmental stages. CircRNAs have been reported to play important roles in ... WebContents: Identification and Characterization of Plant Circular RNAs -- Experimental Strategies for Studying the Function of Plant circRNAs -- Generation of Transgenic Rice Expressing circRNA and its Functional Characterization -- Identification of Circular RNAs by Multiple Displacement Amplification and their Involvement in Plant Development ... shulker boxes cleaned

Identification, biogenesis, function, and mechanism of action of ...

GreenCircRNA: a database for plant circRNAs that act as …

WebFeb 14, 2024 · The functional study on circRNAs has been increasing in the past decade due to its important roles in micro RNA sponge, protein coding, the initiation, and progression of diseases. The study of circRNA functions depends on the full-length sequences of circRNA, and current sequence assembly methods based on short reads … WebJan 9, 2024 · A total of eight plant species are represented in PlantCircNet, 21 in PlantcircBase 7.0, two in CropCircDB, five in LeafcircBase, seven in circFunBase, one in AtCircDB, and 69 in GreenCircRNA. In these databases, circRNA-related information, including their positions in the genome, host genes, and bioinformatics tools, are provided. shulker boxes recipeWebPMID:32655294 GreenCircRNA: a database for plant circRNAs that act as miRNA decoys. PMID:32510565 Development of a sensitive primer extension method for direct detection and quantification of miRNAs from plants. PMID:32163493 Comprehensive analysis of the Gossypium hirsutum L. respiratory burst oxidase homolog (Ghrboh) gene family. shulker boxes minecraft

"WebCircFunBase (Meng et al., 2024), GreenCircRNA (Zhang et al., 2024), CropCircDB (Wang et al., 2024), and AtCircDB (Ye et al., 2024). Each database has its own pros and cons; the major issues are the limited number of plant species and/or collected circRNAs and the fact that the databases are rarely updated after being released. " - Greencircrna

Greencircrna

Methods for Predicting CircRNA-miRNA-mRNA Regulatory …

WebJan 1, 2024 · Europe PMC is an archive of life sciences journal literature. WebJul 11, 2024 · The PMCS is an integrated measurement of genomic and expression conservation with a value up to two; the higher the value, the more conserved the circRNA of interest ( Chu et al., 2024 ). Most circRNAs deposited in PlantcircBase 7.0 have a PMCS of 0.2 to 1.0 ( Figure 3 A ), with 75 circRNAs having a PMCS larger than 1.5.

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WebJan 1, 2024 · Circular RNAs are molecules formed by 3'-5' ligation in a splicing reaction, the so-called backsplicing. Well described in other groups, especially in humans, circRNA studies that include prediction and validation in plants are recent. It has already been shown that circRNAs can interact with microRNAs, acting as sponges, and adding a new layer …

WebMethods for Predicting CircRNA-miRNA-mRNA Regulatory Networks: GreenCircRNA and PlantCircNet Databases as Study Cases Methods Mol Biol. 2024;2362:181-193. doi: … WebHere, taking Arabidopsis thaliana as an example, we firstly show the method for identification of circRNA and construction of circRNA-miRNA-mRNA networks based on GreenCircRNA database, then perform a case study for identifying circRNAs and inferring their function in A. thaliana. Our method can be easily extended and applied to other plants.

WebGreenCircRNA is the ﬁrst database for the prediction of circRNAs that act as miRNA decoys and contains the largest number of plant species. Database URL: http://greencirc.cn WebConstructing CircRNA–miRNA–mRNA Regulatory Networks by Using GreenCircRNA Database . Jingjing Zhang, Ruiqi Liu, Guanglin Li; Pages 173-179. Methods for Predicting CircRNA–miRNA–mRNA Regulatory Networks: GreenCircRNA and PlantCircNet Databases as Study Cases. Nureyev F. Rodrigues, Rogerio Margis; Pages 181-193.

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WebGreenCircRNA(v1.0) is the most comprehensive database containing 213,494 circRNA informations from over 4100 RNA-seq datasets across 69 different species. Based on … shulker box crafting recipe minecraftWebJan 1, 2024 · Europe PMC is an archive of life sciences journal literature. the outdoor boys merchandiseWebSelect search scope, currently: catalog all catalog, articles, website, & more in one search; catalog books, media & more in the Stanford Libraries' collections; articles+ journal articles & other e-resources the outdoor boy youtube channelWebJul 1, 2024 · GreenCircRNA is the first database for the prediction of circRNAs that act as miRNA decoys and contains the largest number of plant species. Database URL: … shulker box give command generatorWebGreenCircRNA. A database for plant circRNAs that act as miRNA decoys. Circular RNAs (circRNAs) are a novel type of RNAs that form covalently closed loop structures with neither 5'- 3' polarities nor polyadenylated ... shulker box gui resource packWebHere, taking Arabidopsis thaliana as an example, we firstly show the method for identification of circRNA and construction of circRNA-miRNA-mRNA networks based on … shulker boxes minecraft recipeWebGreenCircRNA: a database for plant circRNAs that act as miRNA decoys. Circular RNAs (circRNAs) are endogenous non-coding RNAs that form a covalently closed continuous loop, are widely distributed ... shulker box id minecraft