Phonopyatoms
Webclass PhonoTinker (PhonoBase): def __init__ (self, txyz_input_file, key_input_file, force_field_file, supercell_matrix = np. identity (3), primitive_matrix = np. identity (3), displacement_distance = 0.01, show_log = False, show_progress = False, use_NAC = False, symmetrize = True): """ Experimental class to use Tinker to calculate forces, can be used … Webclass PhonoBase: """ Base class for PhonoLAMMPS This class is not designed to be called directly. To use it make a subclass and implement the following methods ...
Phonopyatoms
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Webphonopy_structure (PhonopyAtoms) – A phonopy structure object. get_structure_from_dict ( d ) [source] Extracts a structure from the dictionary extracted from the output files of … Webdef phonopy_converter (self, pbc = True): """Get phonopy representation of the atoms object.""" try: from phonopy.structure.atoms import Atoms as PhonopyAtoms return PhonopyAtoms (symbols = self. elements, positions = self. cart_coords, pbc = pbc, cell = self. lattice_mat,) except Exception: print ("Requires phonopy for this functionality.") pass
Weblist of PhonopyAtoms get_high_symmetry_modulated_supercells(frequency_index: int, maximal_displacement: float = 0.11) → list[phonopy.structure.atoms.PhonopyAtoms] [source] Return modulated cells corresponding to one-dimensional order-parameter directions of an isotropy subgroup. Parameters WebPhonophoresis, also known as sonophoresis or ultrasonophoresis, is when an ultrasound is used to maximize the effects of a topical drug. The ultrasound waves push particles of a …
Web您也可以进一步了解该方法所在 类phonopy.Phonopy 的用法示例。. 在下文中一共展示了 Phonopy.set_force_constants方法 的5个代码示例，这些例子默认根据受欢迎程度排序。. 您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于我们的系统推荐出更棒的Python代 … Web(Unit cell in PhonopyAtoms, optional_structure_info in tuple) The optional_structure_info is given by a tuple. The first element of: it is the unit cell file name for which the unit cell data are read, and the rest is dependent on calculator interface. """ if interface_mode == "phonopy_yaml": if phonopy_yaml_cls is None:
WebSource code for spgrep_modulation.modulation. """Modulation class.""" from __future__ import annotations from warnings import warn import numpy as np from phonopy.harmonic.dynamical_matrix import DynamicalMatrix, DynamicalMatrixNAC from phonopy.phonon.degeneracy import degenerate_sets, get_eigenvectors from … normal shoulder arthrogramWebprimitive : PhonopyAtoms Primitive cell. npoints : int Number of q-points sampled along a path including end points. is_const_interval : bool, optional When True, q-points are sampled in a similar interval. The longest path length divided by npoints including end points is used as the Default is False. normal shoulder external rotation degreesWebSource code for asr.c2db.phonopy. """Phonopy phonon band structure.""" from ase import Atoms import typing from pathlib import Path import numpy as np from ase.parallel import world from ase.dft.kpoints import BandPath import asr from asr.core import (command, option, DictStr, ASRResult, prepare_result, atomsopt) from asr.calculators import ... how to remove sharkbite compression fittinghttp://phonopy.github.io/phonopy/phonopy-module.html how to remove shark filterWebNov 24, 2024 · Re: [Phonopy-users] PhonopyAtoms.get_cell() is depreciated Brought to you by: atztogo Summary Files Reviews Support Mailing Lists Code normal shoulder aromWebSep 25, 2016 · In [1]: In [1]: import os import warnings import numpy as np import pymatgen.core as pmg from phonopy import Phonopy from phonopy.structure.atoms … normal shoulder flexion rangeWebphonopy / phonopy Public Notifications Fork Star develop phonopy/phonopy/harmonic/dynmat_to_fc.py Go to file Cannot retrieve contributors at … how to remove shark bite pipe fitting